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Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 22.
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Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus Evolution 23.
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Generalidades de la familia Filoviridae y el virus del Ébola: una actualización de sus implicaciones en la población humana. Revista Biomédica 24.
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A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era 25.
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Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 26.
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Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases 27.
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BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 28.
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Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics 30.
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The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 31.
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Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 32.
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Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife 33.
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Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution Book Chapter (1)
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Genome structure, life cycle, and taxonomy of Coronaviruses and the evolution of SARS-CoV-2. In: Viral fitness and evolution: population dynamics and adaptive mechanisms, 9, 1 Ed., pp. 305 - 339 (Eds. Domingo, E.; Schuster, P.; Elena, S. F.; Perales, C.). Springer, Cham (2023)
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Women in the European Virus Bioinformatics Center, Viruses 14, (2022)
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Potential novel SARS-CoV-2 variant of interest from lineage AP.1 with N501Y and additional spike mutations identified in Saxony, Germany, Virological, (2021)
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TB’s Chinese travels, Nature Ecology & Evolution 2, pp. 1842 - 1843 (2018)
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Tree balance indices: a comprehensive survey. arXiv, 2109.12281 (2021)
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Molecular epidemiology of SARS-CoV-2: a regional to global perspective. medRxiv, 2021.01.25.21250447 (2021)